PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G12330.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HB-PHD
Protein Properties Length: 903aa    MW: 99582.6 Da    PI: 5.088
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G12330.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.24.2e-11708753752
                      --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
         Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                      f +   + L+ +F++++yps++++e LA++lgLt +qV+ WF   R
  LPERR02G12330.3 708 FGPAINQKLKLYFNEDPYPSRATKENLAQELGLTFNQVSKWFSSTR 753
                      66666789**********************************8766 PP

2PHD43.29.3e-15337392151
                      SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
              PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                      +C++Cg+   + +++++lCdg C++ fH++Cl+++l  e++p+g   wlC+ C++k
  LPERR02G12330.3 337 FCALCGSkdVTLKNDIILCDGiCDRGFHQYCLNPPLLAEDIPQGdeGWLCPACDCK 392
                      7******64445********88*********************999*******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.68E-14327395IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.2E-14333391IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.056335392IPR019787Zinc finger, PHD-finger
PfamPF006285.3E-12337392IPR019787Zinc finger, PHD-finger
SMARTSM002491.5E-10337390IPR001965Zinc finger, PHD-type
CDDcd155041.83E-26337389No hitNo description
PROSITE patternPS013590338389IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007113.297699759IPR001356Homeobox domain
SMARTSM003891.2E-11702763IPR001356Homeobox domain
CDDcd000861.28E-11704757No hitNo description
SuperFamilySSF466895.13E-11704763IPR009057Homeodomain-like
PfamPF000461.7E-8708753IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.3E-12712766IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MEEVSRAHVT AYSPRLSSPT RLPSSVPPAA QGGGARLTVA ASRGRQPVEG RAQGPTWCRW  60
AAGWCIEQEA GGRLTDARRP ASAARTDLSA MDKTPTSDLV LALLANDNAG SNAGSAQEPL  120
TTNGKNSGMR NRFKQTVNRG RKGSQISPSK TYPLRSSRSS VRVLRSASKK RNGTPIVPTN  180
DNIAVQQAVK KRKRSKPLRP EDSRLRSASK KVNKANTELV NDSAGVQPAA KKTRGRPPKG  240
GTPKNEYLVI RKRVRYILNR MNYEQSLIQA YASEGWKGQS LEKIRPEKEL ERAKVEILRC  300
KSRIREAFRN LDCLLSEGKM EESLFDSSGE ISSEDIFCAL CGSKDVTLKN DIILCDGICD  360
RGFHQYCLNP PLLAEDIPQG DEGWLCPACD CKIDCIDVLN ELQEVKLSIH DSWEKVFPEA  420
ASFANGSKQI DVSDLPSDDS ADDDYDPDLA QGRNVDEEKS SGEDESEGSD SDHSSSEDSE  480
SSENRKSKTS KNGRTIDDIG LPSEDSEDGD FDPASPDSDK DQNDESNSDQ SEQSDFTSDS  540
DDFCAEIAKS CGQDEISGPS LSQVRTVDPT DGSAFDSEPN AENLNLAFME TDLEQDMVLP  600
VSSKRQVERL DYKKLYDEAY GKVSSDSSDD EEWSGNSTPQ KGKLEDSETD SLAESPQRGK  660
GFSRRAPVRY QNGEHTQQNV RRGDSVGDQQ TEVLCSNSNG STARKRHFGP AINQKLKLYF  720
NEDPYPSRAT KENLAQELGL TFNQVSKWFS STRHYLRVAT TKKENNIENF TAENNNSNTV  780
DSIKLRGLNE MVMEKVSVDR NDMVSEERTG QSNLNEGIPL RHDTSGEQSV VVTPVLHQGS  840
CIISKEIDLP KCETRDNQGN DSSSNVGTPR VKSAEKMVPG LENADEARRK AVQRELRKMK  900
TGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194KKRKRS
2189196KKRKRSKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0813400.0AB081340.1 Oryza sativa Japonica Group HAZ1 mRNA for PHD-finger family homeodomain protein, complete cds.
GenBankAK1213140.0AK121314.1 Oryza sativa Japonica Group cDNA clone:J023113A13, full insert sequence.
GenBankFJ9401970.0FJ940197.1 Oryza sativa Japonica Group clone KCS150D11 PHD-finger family homeodomain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644127.10.0PREDICTED: homeobox protein HOX1A
TrEMBLA0A0D9VFK80.0A0A0D9VFK8_9ORYZ; Uncharacterized protein
STRINGLOC_Os06g12400.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-88Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain